Download MendeleyCrystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29
Scarsdale, J.N., Peculis, B.A., Wright, H.T.To be published.
1U20
Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29
- PDB DOI: https://doi.org/10.2210/pdb1U20/pdb
- Classification: HYDROLASE
- Organism(s): Xenopus laevis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-07-16 Released: 2005-07-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.254
- R-Value Work: 0.204
- R-Value Observed: 0.209
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| U8 snoRNA-binding protein X29 | 212 | Xenopus laevis | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q6TEC1 (Xenopus laevis) Explore Q6TEC1 Go to UniProtKB: Q6TEC1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6TEC1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.254
- R-Value Work: 0.204
- R-Value Observed: 0.209
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.188 | α = 90 |
| b = 82.99 | β = 90 |
| c = 111.063 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SOLVE | phasing |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2005-07-26 Deposition Author(s): Scarsdale, J.N., Peculis, B.A., Wright, H.T.
Revision History (Full details and data files)
- Version 1.0: 2005-07-26
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations
