Download MendeleyStructural influences on product specificity in amylomaltase from Aquifex aeolicus
Barends, T.R.M., Korf, H., Kaper, T., van der Maarel, M.J.E.C., Dijkhuizen, L., Dijkstra, B.W.To be published.
1TZ7
Aquifex aeolicus amylomaltase
- PDB DOI: https://doi.org/10.2210/pdb1TZ7/pdb
- Classification: TRANSFERASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-07-09 Released: 2005-08-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.243
- R-Value Work: 0.215
- R-Value Observed: 0.216
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4-alpha-glucanotransferase | 505 | Aquifex aeolicus | Mutation(s): 0 EC: 2.4.1.25 |  | |
UniProt | |||||
Find proteins for O66937 (Aquifex aeolicus (strain VF5)) Explore O66937 Go to UniProtKB: O66937 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O66937 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | C [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.243
- R-Value Work: 0.215
- R-Value Observed: 0.216
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 156.745 | α = 90 |
| b = 156.745 | β = 90 |
| c = 169.161 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2005-08-02 Deposition Author(s): Barends, T.R.M., Korf, H., Kaper, T., van der Maarel, M.J.E.C., Dijkhuizen, L., Dijkstra, B.W.
Revision History (Full details and data files)
- Version 1.0: 2005-08-02
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2024-03-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2024-04-03
Changes: Refinement description
