Download MendeleyCrystal Structure of penicillin-binding protein 4 (PBP4) from Staphylococcus aureus
Rajashankar, K.R., Ray, S.S., Bonanno, J.B., Pinho, M., Tomasz, A., Burley, S.K.To be published.
1TVF
Crystal Structure of penicillin-binding protein 4 (PBP4) from Staphylococcus aureus
- PDB DOI: https://doi.org/10.2210/pdb1TVF/pdb
- Classification: PENICILLIN BINDING
- Organism(s): Staphylococcus aureus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2004-06-29 Released: 2004-07-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.205
- R-Value Work: 0.166
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| penicillin binding protein 4 | 369 | Staphylococcus aureus | Mutation(s): 0 Gene Names: PBP4 |  | |
UniProt | |||||
Find proteins for Q57540 (Staphylococcus aureus) Explore Q57540 Go to UniProtKB: Q57540 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q57540 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], G [auth B], H [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| UNL Query on UNL | F [auth A], I [auth B] | Unknown ligand QAOWNCQODCNURD-UHFFFAOYSA-L | |||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.205
- R-Value Work: 0.166
- R-Value Observed: 0.166
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.713 | α = 90 |
| b = 140.189 | β = 90 |
| c = 145.775 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MLPHARE | phasing |
Entry History
Deposition Data
- Released Date: 2004-07-06 Deposition Author(s): Rajashankar, K.R., Ray, S.S., Bonanno, J.B., Pinho, M., Tomasz, A., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2004-07-06
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2023-08-23
Changes: Data collection, Database references, Refinement description
