1TFV
CRYSTAL STRUCTURE OF A BUFFALO SIGNALING GLYCOPROTEIN (SPB-40) SECRETED DURING INVOLUTION
- PDB DOI: https://doi.org/10.2210/pdb1TFV/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Bubalus bubalis
- Mutation(s): No 
- Deposited: 2004-05-27 Released: 2004-07-13 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.288 
- R-Value Work: 0.237 
- R-Value Observed: 0.240 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
mammary gland protein 40 | 361 | Bubalus bubalis | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q7YS85 (Bubalus bubalis) Explore Q7YS85  Go to UniProtKB:  Q7YS85 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7YS85 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.288 
- R-Value Work: 0.237 
- R-Value Observed: 0.240 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 62.764 | α = 90 |
b = 66.559 | β = 90 |
c = 107.137 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |
Entry History 
Deposition Data
- Released Date: 2004-07-13  Deposition Author(s): Bilgrami, S., Saravanan, K., Yadav, S., Kaur, P., Srinivasan, A., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2004-07-13
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-08-23
Changes: Data collection, Database references, Refinement description, Structure summary