Download MendeleyStructure of apo and ternary forms of Toxoplasma gondii LDH2
Kavanagh, K.L., Wilson, D.K.To be published.
1SOW
T. gondii bradyzoite-specific LDH (LDH2) in complex with NAD and oxalate
- PDB DOI: https://doi.org/10.2210/pdb1SOW/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Toxoplasma gondii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-03-15 Released: 2005-03-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.212
- R-Value Work: 0.185
- R-Value Observed: 0.185
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| L-lactate dehydrogenase | 328 | Toxoplasma gondii | Mutation(s): 0 EC: 1.1.1.27 |  | |
UniProt | |||||
Find proteins for Q27797 (Toxoplasma gondii) Explore Q27797 Go to UniProtKB: Q27797 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q27797 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | D [auth A], F [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| OXL Query on OXL | C [auth A], E [auth B] | OXALATE ION C2 O4 MUBZPKHOEPUJKR-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.212
- R-Value Work: 0.185
- R-Value Observed: 0.185
- Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 140.712 | α = 90 |
| b = 140.712 | β = 90 |
| c = 74.74 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| EPMR | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2005-03-15 Deposition Author(s): Kavanagh, K.L., Wilson, D.K.
Revision History (Full details and data files)
- Version 1.0: 2005-03-15
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description
