Download MendeleyCrystal structure of MES buffer bound form of glyceraldehyde 3-phosphate dehydrogenase from Escherichia coli
Shin, D.H., Thor, J., Yokota, H., Kim, R., Kim, S.H.To be published.
1S7C
Crystal structure of MES buffer bound form of glyceraldehyde 3-phosphate dehydrogenase from Escherichia coli
- PDB DOI: https://doi.org/10.2210/pdb1S7C/pdb
- Classification: STRUCTURAL GENOMICS, OXIDOREDUCTASE
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-01-29 Released: 2004-08-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.220
- R-Value Work: 0.200
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyceraldehyde 3-phosphate dehydrogenase A | 331 | Escherichia coli | Mutation(s): 0 Gene Names: gapA EC: 1.2.1.12 |  | |
UniProt | |||||
Find proteins for P0A9B2 (Escherichia coli (strain K12)) Explore P0A9B2 Go to UniProtKB: P0A9B2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A9B2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MES Query on MES | G [auth A] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.220
- R-Value Work: 0.200
- R-Value Observed: 0.200
- Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 121.511 | α = 90 |
| b = 121.511 | β = 90 |
| c = 156.939 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2004-08-10 Deposition Author(s): Shin, D.H., Thor, J., Yokota, H., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)
Revision History (Full details and data files)
- Version 1.0: 2004-08-10
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations
