1S6R

908R class c beta-lactamase bound to iodo-acetamido-phenyl boronic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.293 
  • R-Value Observed: 0.226 

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This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Enterobacter cloacae 908R class C beta-lactamase bound to iodo-acetamido-phenyl boronic acid, a transition-state analogue.

Wouters, J.Fonze, E.Vermeire, M.Frere, J.M.Charlier, P.

(2003) Cell Mol Life Sci 60: 1764-1773

  • DOI: https://doi.org/10.1007/s00018-003-3189-2
  • Primary Citation of Related Structures:  
    1S6R

  • PubMed Abstract: 

    The structures of the class C beta-lactamase from Enterobacter cloacae 908R alone and in complex with a boronic acid transition-state analogue were determined by X-ray crystallography at 2.1 and 2.3 A, respectively. The structure of the enzyme resembles those of other class C beta-lactamases. The structure of the complex with the transition-state analogue, iodo-acetamido-phenyl boronic acid, shows that the inhibitor is covalently bound to the active-site serine (Ser64). Binding of the inhibitor within the active site is compared with previously determined structures of complexes with other class C enzymes. The structure of the boronic acid adduct indicates ways to improve the affinity of this class of inhibitors. This structure of 908R class C beta-lactamase in complex with a transition-state analogue provides further insights into the mechanism of action of these hydrolases.


  • Organizational Affiliation

    Institut de Recherche Microbiologiques JM Wiame, Brussels, Belgium. jwouters@dbm.ulb.ac.be


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
beta-lactamase359Enterobacter cloacaeMutation(s): 0 
EC: 3.5.2.6
UniProt
Find proteins for Q93CA2 (Enterobacter cloacae)
Explore Q93CA2 
Go to UniProtKB:  Q93CA2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ93CA2
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IAP
Query on IAP

Download Ideal Coordinates CCD File 
B [auth A]4-IODO-ACETAMIDO PHENYLBORONIC ACID
C8 H9 B I N O3
LMHXPDZPXBIIEX-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.293 
  • R-Value Observed: 0.226 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.381α = 90
b = 83.763β = 90
c = 95.81γ = 90
Software Package:
Software NamePurpose
SHELXmodel building
SHELXL-97refinement
SHELXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

  • Released Date: 2004-02-24 
  • Deposition Author(s): Wouters, J.

Revision History  (Full details and data files)

  • Version 1.0: 2004-02-24
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance