POP-OUT | CLOSE
 
CRYSTAL STRUCTURE OF ESCHERICHIA COLI ENDONUCLEASE IV IN COMPLEX WITH DAMAGED DNA
DOI:10.2210/pdb1qum/pdb   NDB ID: PD0068
1QUM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 39507.02
    Molecule: 5'-D(*CP*GP*TP*CP*C)-3'
    Polymer: 1 Type: dna Length: 6
    Chains: B
    Molecule: 5'-D(*(3DR)P*CP*GP*AP*CP*GP*A)-3'
    Polymer: 2 Type: dna Length: 7
    Chains: C
    Molecule: 5'-D(*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*G)-3'
    Polymer: 3 Type: dna Length: 13
    Chains: D
    Molecule: ENDONUCLEASE IV
    Polymer: 4 Type: protein Length: 285
    Chains: A
    EC#: 3.1.21.2   
    Organism: Escherichia coli
    Gene Names: nfo b2159 JW2146
    UniProtKB: Protein Feature View | Search PDB | P0A6C1  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1QTW  CONTAINS THE HIGH RESOLUTION CRYSTAL STRUCTURE OF ENDOIV WITHOUT BOUND DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
    Search 
    Download 
    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
    Search 
    3DR C5 H11 O6 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0068
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Hosfield, D.J.,  Guan, Y.,  Haas, B.J.,  Cunningham, R.P.,  Tainer, J.A.

    Deposition:   1999-07-01
    Release:   1999-08-31
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   1.55
    R-Value: 0.203 (obs.)
    R-Free: 0.254
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 133.12 α = 90.00 
    b = 58.73 β = 94.97 
    c = 51.15 γ = 90.00