1QD7

PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.50 Å

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.

Clemons Jr., W.M.May, J.L.Wimberly, B.T.McCutcheon, J.P.Capel, M.S.Ramakrishnan, V.

(1999) Nature 400: 833-840

  • DOI: https://doi.org/10.1038/23631
  • Primary Citation of Related Structures:  
    1QD7

  • PubMed Abstract: 

    The 30S ribosomal subunit binds messenger RNA and the anticodon stem-loop of transfer RNA during protein synthesis. A crystallographic analysis of the structure of the subunit from the bacterium Thermus thermophilus is presented. At a resolution of 5.5 A, the phosphate backbone of the ribosomal RNA is visible, as are the alpha-helices of the ribosomal proteins, enabling double-helical regions of RNA to be identified throughout the subunit, all seven of the small-subunit proteins of known crystal structure to be positioned in the electron density map, and the fold of the entire central domain of the small-subunit ribosomal RNA to be determined.


  • Organizational Affiliation

    Department of Biochemistry, University of Utah School of Medicine, Salt Lake City 84103, USA.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
S4 RIBOSOMAL PROTEIN159Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P81288 (Geobacillus stearothermophilus)
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UniProt GroupP81288
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
S5 RIBOSOMAL PROTEIN145Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P02357 (Geobacillus stearothermophilus)
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UniProt GroupP02357
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
S6 RIBOSOMAL PROTEIN97Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for Q5SLP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SLP8
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
S7 RIBOSOMAL PROTEIN135Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P17291 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17291
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
S8 RIBOSOMAL PROTEIN136Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P0DOY9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP0DOY9
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
S15 RIBOSOMAL PROTEIN85Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P05766 (Geobacillus stearothermophilus)
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UniProt GroupP05766
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
S17 RIBOSOMAL PROTEIN89Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P23828 (Geobacillus stearothermophilus)
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UniProt GroupP23828
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
S20 RIBOSOMAL PROTEIN100Thermus thermophilusMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
CENTRAL FRAGMENT OF 16 S RNA271Thermus thermophilus
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Entity ID: 2
MoleculeChains LengthOrganismImage
END FRAGMENT OF 16 S RNA88Thermus thermophilus
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.50 Å
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 401.6α = 90
b = 401.6β = 90
c = 174.5γ = 90
Software Package:
Software NamePurpose
SOLVEphasing
Omodel building
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-08-31
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2023-08-16
    Changes: Data collection, Database references, Polymer sequence, Refinement description