1Q2Y

Crystal structure of the protein YJCF from Bacillus subtilis: a member of the GCN5-related N-acetyltransferase superfamily fold

PDB DOI: https://doi.org/10.2210/pdb1Q2Y/pdb

Classification: structural genomics, unknown function
Organism(s): Bacillus subtilis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-07-27 Released: 2003-08-19
Deposition Author(s): Fedorov, A.A., Ramagopal, U.A., Fedorov, E.V., Thirumuruhan, R., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.265
R-Value Work: 0.234
R-Value Observed: 0.239

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the protein YJCF from Bacillus subtilis: a member of the GCN5-related N-acetyltransferase superfamily

Fedorov, A.A., Ramagopal, U.A., Fedorov, E.V., Thirumuruhan, R., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 15.69 kDa
Atom Count: 1,137
Modelled Residue Count: 140
Deposited Residue Count: 140
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
similar to hypothetical proteins	A	140	Bacillus subtilis	Mutation(s): 0
UniProt
Find proteins for O31628 (Bacillus subtilis (strain 168)) Explore O31628 Go to UniProtKB: O31628
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O31628
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.265
R-Value Work: 0.234
R-Value Observed: 0.239
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.266	α = 90
b = 59.283	β = 90
c = 71.556	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-08-19

Deposition Author(s):

Ramagopal, U.A.

Thirumuruhan, R.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2003-08-19
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-02-03
Changes: Structure summary
Version 1.4: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.