Download MendeleyStructure of the YlqF GTPase from B. subtilis
Kniewel, R., Buglino, J., Lima, C.D.To be published.
1PUJ
Structure of B. subtilis YlqF GTPase
- PDB DOI: https://doi.org/10.2210/pdb1PUJ/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2003-06-24 Released: 2003-07-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.250
- R-Value Work: 0.216
- R-Value Observed: 0.216
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| conserved hypothetical protein ylqF | 282 | Bacillus subtilis | Mutation(s): 0 Gene Names: YLQF |  | |
UniProt | |||||
Find proteins for O31743 (Bacillus subtilis (strain 168)) Explore O31743 Go to UniProtKB: O31743 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O31743 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GNP Query on GNP | C [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H17 N6 O13 P3 UQABYHGXWYXDTK-UUOKFMHZSA-N |  | ||
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.250
- R-Value Work: 0.216
- R-Value Observed: 0.216
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.749 | α = 90 |
| b = 68.568 | β = 90 |
| c = 105.574 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| RESOLVE | model building |
| CNS | refinement |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2003-07-08 Deposition Author(s): Kniewel, R., Buglino, J., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2003-07-08
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references
