1PUG

Structure of E. coli Ybab

PDB DOI: https://doi.org/10.2210/pdb1PUG/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-06-24 Released: 2003-07-08
Deposition Author(s): Kniewel, R., Buglino, J., Chadna, T., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.284
R-Value Work: 0.212
R-Value Observed: 0.216

wwPDB Validation 3D Report Full Report

This is version 1.5 of the entry. See complete history.

Literature

Structure of E. coli Ybab

Kniewel, R., Buglino, J., Chadna, T., Lima, C.D.

To be published.

Macromolecule Content

Total Structure Weight: 48.12 kDa
Atom Count: 2,655
Modelled Residue Count: 323
Deposited Residue Count: 436
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical UPF0133 protein ybaB	A, B, C, D	109	Escherichia coli	Mutation(s): 0 Gene Names: YBAB
UniProt
Find proteins for P0A8B5 (Escherichia coli (strain K12)) Explore P0A8B5 Go to UniProtKB: P0A8B5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A8B5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.284
R-Value Work: 0.212
R-Value Observed: 0.216
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.866	α = 90
b = 84.236	β = 90
c = 86.636	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	model building
REFMAC	refinement
RESOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-07-08

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2003-07-08
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-25
Changes: Author supporting evidence
Version 1.4: 2021-02-03
Changes: Structure summary
Version 1.5: 2024-02-14
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.