1PCI

PROCARICAIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The prosequence of procaricain forms an alpha-helical domain that prevents access to the substrate-binding cleft.

Groves, M.R.Taylor, M.A.Scott, M.Cummings, N.J.Pickersgill, R.W.Jenkins, J.A.

(1996) Structure 4: 1193-1203

  • DOI: https://doi.org/10.1016/s0969-2126(96)00127-x
  • Primary Citation of Related Structures:  
    1PCI

  • PubMed Abstract: 

    Cysteine proteases are involved in a variety of cellular processes including cartilage degradation in arthritis, the progression of Alzheimer's disease and cancer invasion: these enzymes are therefore of immense biological importance. Caricain is the most basic of the cysteine proteases found in the latex of Carica papaya. It is a member of the papain superfamily and is homologous to other plant and animal cysteine proteases. Caricain is naturally expressed as an inactive zymogen called procaricain. The inactive form of the protease contains an inhibitory proregion which consists of an additional 106 N-terminal amino acids; the proregion is removed upon activation.


  • Organizational Affiliation

    Department of Food Macromolecular Science, Institute of Food Research, Reading, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROCARICAIN
A, B, C
322Carica papayaMutation(s): 1 
Gene Names: OMEGA
EC: 3.4.22.6
UniProt
Find proteins for P10056 (Carica papaya)
Explore P10056 
Go to UniProtKB:  P10056
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10056
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.226 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84α = 90
b = 205.4β = 90
c = 192.2γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
CCP4data reduction
DMmodel building
RAVEmodel building
X-PLORmodel building
X-PLORrefinement
CCP4data scaling
DMphasing
RAVEphasing
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-04-01
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-11-03
    Changes: Database references
  • Version 1.4: 2023-08-09
    Changes: Refinement description