Download MendeleyStructure of the hypothetical protein TM0936 from Thermotoga maritima at 1.5A bound to Ni and methionine
Kniewel, R., Buglino, J.A., Lima, C.D.To be published.
1P1M
Structure of Thermotoga maritima amidohydrolase TM0936 bound to Ni and methionine
- PDB DOI: https://doi.org/10.2210/pdb1P1M/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2003-04-12 Released: 2003-04-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.213
- R-Value Work: 0.201
- R-Value Observed: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein TM0936 | 406 | Thermotoga maritima | Mutation(s): 0 Gene Names: TM0936 |  | |
UniProt | |||||
Find proteins for Q9X034 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X034 Go to UniProtKB: Q9X034 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X034 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MET Query on MET | C [auth A] | METHIONINE C5 H11 N O2 S FFEARJCKVFRZRR-BYPYZUCNSA-N |  | ||
| NI Query on NI | B [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.213
- R-Value Work: 0.201
- R-Value Observed: 0.201
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.373 | α = 90 |
| b = 113.373 | β = 90 |
| c = 79.884 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| RESOLVE | model building |
| CNS | refinement |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2003-04-29 Deposition Author(s): Kniewel, R., Buglino, J.A., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2003-04-29
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references
