1OBB
alpha-glucosidase A, AglA, from Thermotoga maritima in complex with maltose and NAD+
- PDB DOI: https://doi.org/10.2210/pdb1OBB/pdb
- Classification: HYDROLASE
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2003-01-29 Released: 2003-05-21 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.235 
- R-Value Work: 0.199 
- R-Value Observed: 0.199 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
ALPHA-GLUCOSIDASE | 480 | Thermotoga maritima MSB8 | Mutation(s): 0  EC: 3.2.1.20 | ||
UniProt | |||||
Find proteins for O33830 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore O33830  Go to UniProtKB:  O33830 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O33830 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD Query on NAD | E [auth A], F [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A, B | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900001 Query on PRD_900001 | C, D | alpha-maltose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.235 
- R-Value Work: 0.199 
- R-Value Observed: 0.199 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 75 | α = 90 |
b = 85.7 | β = 106 |
c = 83.6 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
SHARP | phasing |
Entry History 
Deposition Data
- Released Date: 2003-05-21  Deposition Author(s): Lodge, J.A., Maier, T., Liebl, W., Hoffmann, V., Strater, N.
Revision History (Full details and data files)
- Version 1.0: 2003-05-21
Type: Initial release - Version 1.1: 2014-11-05
Changes: Atomic model, Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance - Version 1.2: 2019-04-10
Changes: Data collection, Derived calculations, Other, Source and taxonomy - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary