1N3O
Pterocarcpus angolensis lectin in complex with alpha-methyl glucose
- PDB DOI: https://doi.org/10.2210/pdb1N3O/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Pterocarpus angolensis
- Mutation(s): No
- Deposited: 2002-10-29 Released: 2002-11-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.210
- R-Value Work: 0.186
- R-Value Observed: 0.188
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| lectin PAL | 252 | Pterocarpus angolensis | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8GSD2 (Pterocarpus angolensis) Explore Q8GSD2 Go to UniProtKB: Q8GSD2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8GSD2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GYP Query on GYP | C [auth A], F [auth B] | methyl alpha-D-glucopyranoside C7 H14 O6 HOVAGTYPODGVJG-ZFYZTMLRSA-N |  | ||
| MN Query on MN | D [auth A], G [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A], H [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.210
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.76 | α = 90 |
| b = 83.55 | β = 90 |
| c = 122.93 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2002-11-20 Deposition Author(s): Loris, R., Imberty, A., Beeckmans, S., Van Driessche, E., Read, J.S., Bouckaert, J., De Greve, H., Buts, L., Wyns, L.
Revision History (Full details and data files)
- Version 1.0: 2002-11-20
Type: Initial release - Version 1.1: 2008-04-28
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2024-03-13
Changes: Data collection, Database references, Structure summary
