1M1J
Crystal structure of native chicken fibrinogen with two different bound ligands
- PDB DOI: https://doi.org/10.2210/pdb1M1J/pdb
- Entry: 1M1J supersedes: 1JFE
- Classification: BLOOD CLOTTING
- Organism(s): Gallus gallus
- Mutation(s): No 
- Deposited: 2002-06-19 Released: 2002-06-26 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.256 
- R-Value Work: 0.227 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fibrinogen alpha subunit | 491 | Gallus gallus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P14448 (Gallus gallus) Explore P14448  Go to UniProtKB:  P14448 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14448 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fibrinogen beta chain | 464 | Gallus gallus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q02020 (Gallus gallus) Explore Q02020  Go to UniProtKB:  Q02020 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q02020 | ||||
Sequence AnnotationsExpand | |||||
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(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fibrinogen gamma chain | 409 | Gallus gallus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for O93568 (Gallus gallus) Explore O93568  Go to UniProtKB:  O93568 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O93568 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
GLY-PRO-ARG-PRO peptide | 4 | N/A | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | N [auth C], S [auth F], U [auth I] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
NDG Query on NDG | K [auth B], M [auth C], P [auth E], R [auth F], V [auth J] | 2-acetamido-2-deoxy-alpha-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-PVFLNQBWSA-N | |||
CA Query on CA | L [auth B], O [auth C], Q [auth E], T [auth F] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.256 
- R-Value Work: 0.227 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 114.09 | α = 90 |
b = 100.02 | β = 105.79 |
c = 200.09 | γ = 90 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |
CNS | refinement |
Entry History 
Deposition Data
- Released Date: 2002-06-26  Deposition Author(s): Yang, Z., Kollman, J.M., Pandi, L., Doolittle, R.F.
- This entry supersedes: 1JFE
Revision History (Full details and data files)
- Version 1.0: 2002-06-26
Type: Initial release - Version 1.1: 2008-04-28
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary