1LV2

Hepatocyte Nuclear Factor 4 is a Transcription Factor that Constitutively Binds Fatty Acids


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.247 

wwPDB Validation   3D Report Full Report


This is version 1.7 of the entry. See complete history


Literature

Hepatocyte Nuclear Factor 4 Is a Transcription Factor that Constitutively Binds Fatty Acids.

Wisely, G.B.Miller, A.B.Davis, R.G.Jr Thornquest, A.D.Johnson, R.Spitzer, T.Sefler, A.Shearer, B.Moore, J.T.Willson, T.M.Williams, S.P.

(2002) Structure 10: 1225-1234

  • DOI: https://doi.org/10.1016/s0969-2126(02)00829-8
  • Primary Citation of Related Structures:  
    1LV2

  • PubMed Abstract: 

    The 2.7 A X-ray crystal structure of the HNF4gamma ligand binding domain (LBD) revealed the presence of a fatty acid within the pocket, with the AF2 helix in a conformation characteristic of a transcriptionally active nuclear receptor. GC/MS and NMR analysis of chloroform/methanol extracts from purified HNF4alpha and HNF4gamma LBDs identified mixtures of saturated and cis-monounsaturated C14-18 fatty acids. The purified HNF4 LBDs interacted with nuclear receptor coactivators, and both HNF4 subtypes show high constitutive activity in transient transfection assays, which was reduced by mutations designed to interfere with fatty acid binding. The endogenous fatty acids did not readily exchange with radiolabeled palmitic acid, and all attempts to displace them without denaturing the protein failed. Our results suggest that the HNF4s may be transcription factors that are constitutively bound to fatty acids.


  • Organizational Affiliation

    GlaxoSmithKline Inc., 5 Moore Drive, Research Triangle Park, NC 27709, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hepatocyte nuclear factor 4-gamma229Homo sapiensMutation(s): 0 
Gene Names: HNF4G
UniProt & NIH Common Fund Data Resources
Find proteins for Q14541 (Homo sapiens)
Explore Q14541 
Go to UniProtKB:  Q14541
PHAROS:  Q14541
GTEx:  ENSG00000164749 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14541
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLM
Query on PLM

Download Ideal Coordinates CCD File 
B [auth A]PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.247 
  • Space Group: I 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 152.708α = 90
b = 152.708β = 90
c = 93.421γ = 90
Software Package:
Software NamePurpose
MAR345data collection
HKL-2000data reduction
SHARPphasing
CNSrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-12-18
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-11-16
    Changes: Atomic model
  • Version 1.4: 2017-10-11
    Changes: Refinement description
  • Version 1.5: 2018-01-31
    Changes: Experimental preparation
  • Version 1.6: 2024-02-14
    Changes: Data collection, Database references, Derived calculations
  • Version 1.7: 2024-04-03
    Changes: Refinement description