1L2W

Crystal Structure of the Yersinia Virulence Effector YopE Chaperone-binding Domain in Complex with its Secretion Chaperone, SycE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.251 

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This is version 1.3 of the entry. See complete history


Literature

Three-dimensional secretion signals in chaperone-effector complexes of bacterial pathogens.

Birtalan, S.C.Phillips, R.M.Ghosh, P.

(2002) Mol Cell 9: 971-980

  • DOI: https://doi.org/10.1016/s1097-2765(02)00529-4
  • Primary Citation of Related Structures:  
    1L2W

  • PubMed Abstract: 

    The type III secretion system (TTSS) of Gram-negative bacterial pathogens delivers effector proteins required for virulence directly into the cytosol of host cells. Delivery of many effectors depends on association with specific cognate chaperones in the bacterial cytosol. The mechanism of chaperone action is not understood. Here we present biochemical and crystallographic results on the Yersinia SycE-YopE chaperone-effector complex that contradict previous models of chaperone function and demonstrate that chaperone action is isolated to only a small portion of the effector. This, together with evidence for stereochemical conservation between chaperone-effector complexes, which are otherwise unrelated in sequence, indicates that these complexes function as general, three-dimensional TTSS secretion signals and may endow a temporal order to secretion.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
YopE regulator
A, B, C, D, E
A, B, C, D, E, F, G, H
123Yersinia pseudotuberculosisMutation(s): 0 
Gene Names: syce
UniProt
Find proteins for A0A0N9NJF3 (Yersinia pseudotuberculosis)
Explore A0A0N9NJF3 
Go to UniProtKB:  A0A0N9NJF3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0N9NJF3
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane virulence protein yopE
I, J, K, L
69Yersinia pseudotuberculosisMutation(s): 0 
Gene Names: yope
UniProt
Find proteins for P08008 (Yersinia pseudotuberculosis serotype I (strain IP32953))
Explore P08008 
Go to UniProtKB:  P08008
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08008
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.251 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.845α = 103.37
b = 73.352β = 109.18
c = 74.263γ = 107.36
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-06-12
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-08-16
    Changes: Data collection, Database references, Refinement description