Download MendeleyCrystal structure of glycine N-methyltransferase complexed with S-adenosylmethionine and acetate
Takusagawa, F., Huang, Y.To be published.
1KIA
Crystal structure of glycine N-methyltransferase complexed with S-adenosylmethionine and acetate
- PDB DOI: https://doi.org/10.2210/pdb1KIA/pdb
- Classification: TRANSFERASE
- Organism(s): Rattus norvegicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2001-12-02 Released: 2003-06-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.286
- R-Value Work: 0.216
- R-Value Observed: 0.221
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycine N-methyltransferase | 292 | Rattus norvegicus | Mutation(s): 0 EC: 2.1.1.20 |  | |
UniProt | |||||
Find proteins for P13255 (Rattus norvegicus) Explore P13255 Go to UniProtKB: P13255 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13255 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAM Query on SAM | F [auth A], H [auth B], J [auth C], L [auth D] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N |  | ||
| ACT Query on ACT | E [auth A], G [auth B], I [auth C], K [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.286
- R-Value Work: 0.216
- R-Value Observed: 0.221
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.95 | α = 90 |
| b = 117.01 | β = 90 |
| c = 137.78 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| AMoRE | phasing |
| X-PLOR | refinement |
Entry History
Deposition Data
- Released Date: 2003-06-10 Deposition Author(s): Takusagawa, F., Huang, Y.
Revision History (Full details and data files)
- Version 1.0: 2003-06-10
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2024-02-14
Changes: Data collection, Database references, Derived calculations
