1KEY

Crystal Structure of Mouse Testis/Brain RNA-binding Protein (TB-RBP)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.247 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of TB-RBP, a Novel RNA-binding and Regulating Protein

Pascal, J.M.Hart, P.J.Hecht, N.B.Robertus, J.D.

(2002) J Mol Biol 319: 1049-1057

  • DOI: https://doi.org/10.1016/S0022-2836(02)00364-9
  • Primary Citation of Related Structures:  
    1KEY

  • PubMed Abstract: 

    The testis/brain-RNA-binding protein (TB-RBP) spatially and temporally controls the expression of specific mRNAs in developing male germ cells and brain cells, and is implicated in DNA recombination and repair events. We report the 2.65 A crystal structure of mouse TB-RBP. The structure is predominantly alpha-helical and exhibits a novel protein fold and mode of assembly. Crystal symmetry and molecular symmetry combine to form an octet of TB-RBP monomers in the shape of an elongated spherical particle with a large cavity at its center. Amino acid residues that affect RNA and DNA binding are located on the interior surface of the assembled particle, and a putative nucleotide-binding domain that controls RNA binding is located at a dimer interface. Other modes of assembly are suggested for TB-RBP based on our structure and recently reported electron microscopic reconstructions of human TB-RBP.


  • Organizational Affiliation

    Institute for Cellular and Molecular Biology and the Department of Chemistry and Biochemistry, University of Texas at Austin, 78712, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
translin
A, B, C, D
235Mus musculusMutation(s): 0 
UniProt
Find proteins for Q62348 (Mus musculus)
Explore Q62348 
Go to UniProtKB:  Q62348
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ62348
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.247 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.246α = 90
b = 135.457β = 90
c = 91.228γ = 90
Software Package:
Software NamePurpose
DMmodel building
CNSrefinement
SCALEPACKdata scaling
DMphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-07-03
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2024-02-07
    Changes: Data collection, Database references, Refinement description