Download MendeleyExamination of the Structural Basis for O(H) Blood Group Specificity by Ulex europaeus Lectin I
Audette, G.F., Olson, D.J.H., Ross, A.R.S., Quail, J.W., Delbaere, L.T.J.(2002) Can J Chem 80: 1010-1021
1JXN
Crystal Structure of the Lectin I from Ulex europaeus in complex with the methyl glycoside of alpha-L-fucose
- PDB DOI: https://doi.org/10.2210/pdb1JXN/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Ulex europaeus
- Mutation(s): No
- Deposited: 2001-09-07 Released: 2002-12-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.289
- R-Value Work: 0.202
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| anti-H(O) lectin I | 242 | Ulex europaeus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P22972 (Ulex europaeus) Explore P22972 Go to UniProtKB: P22972 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22972 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MFU Query on MFU | E [auth A], H [auth B], K [auth C], O [auth D] | methyl alpha-L-fucopyranoside C7 H14 O5 OHWCAVRRXKJCRB-CXNFULCWSA-N |  | ||
| MRD Query on MRD | N [auth C] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | ||
| MN Query on MN | F [auth A], I [auth B], L [auth C], P [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
| CA Query on CA | G [auth A], J [auth B], M [auth C], Q [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.289
- R-Value Work: 0.202
- R-Value Observed: 0.202
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.81 | α = 90 |
| b = 69 | β = 106.76 |
| c = 119.02 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| X-PLOR | refinement |
Entry History
Deposition Data
- Released Date: 2002-12-06 Deposition Author(s): Audette, G.F., Olson, D.J.H., Ross, A.R.S., Quail, J.W., Delbaere, L.T.J.
Revision History (Full details and data files)
- Version 1.0: 2002-12-06
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.4: 2023-08-16
Changes: Data collection, Database references, Refinement description, Structure summary
