1JR7

CRYSTAL STRUCTURE OF GAB REVEALS OXIDOREDUCTASE FOLD

PDB DOI: https://doi.org/10.2210/pdb1JR7/pdb
Entry: 1JR7 supersedes: 1JFY

Classification: OXIDOREDUCTASE, LYASE
Organism(s): Escherichia coli
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2001-08-12 Released: 2001-08-22
Deposition Author(s): Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.240
R-Value Work: 0.193

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Structural genomics: a pipeline for providing structures for the biologist.

Chance, M.R., Bresnick, A.R., Burley, S.K., Jiang, J.S., Lima, C.D., Sali, A., Almo, S.C., Bonanno, J.B., Buglino, J.A., Boulton, S., Chen, H., Eswar, N., He, G., Huang, R., Ilyin, V., McMahan, L., Pieper, U., Ray, S., Vidal, M., Wang, L.K.

(2002) Protein Sci 11: 723-738

PubMed: 11910018 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1110/ps.4570102
Primary Citation of Related Structures:
1JR7

Organizational Affiliation

Center for Synchrotron Biosciences, Albert Einstein College of Medicine, Bronx, New York 10461, USA. mrc@aecom.yu.edu

Macromolecule Content

Total Structure Weight: 36.03 kDa
Atom Count: 2,811
Modelled Residue Count: 306
Deposited Residue Count: 311
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION	A	311	Escherichia coli	Mutation(s): 0 Gene Names: GAB
UniProt
Find proteins for P76621 (Escherichia coli (strain K12)) Explore P76621 Go to UniProtKB: P76621
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P76621
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE2 Query on FE2 Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.240
R-Value Work: 0.193
Space Group: I 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.479	α = 90
b = 120.479	β = 90
c = 136.604	γ = 90

Software Package:

Software Name	Purpose
SOLVE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2001-08-22

Deposition Author(s):

Lima, C.D.

Burley, S.K.

New York SGX Research Center for Structural Genomics (NYSGXRC)

This entry supersedes: 1JFY

Revision History (Full details and data files)

Version 1.0: 2001-08-22
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
Version 1.4: 2023-02-08
Changes: Database references, Derived calculations

Prepare Data

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Help and Resources

1JR7

CRYSTAL STRUCTURE OF GAB REVEALS OXIDOREDUCTASE FOLD

Structural genomics: a pipeline for providing structures for the biologist.

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)