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1JDY
RABBIT MUSCLE PHOSPHOGLUCOMUTASE
- PDB DOI: https://doi.org/10.2210/pdb1JDY/pdb
- Classification: PHOSPHOTRANSFERASE
- Organism(s): Oryctolagus cuniculus
- Mutation(s): No
- Deposited: 1996-07-11 Released: 1997-03-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.244
- R-Value Work: 0.186
- R-Value Observed: 0.186
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PHOSPHOGLUCOMUTASE | 561 | Oryctolagus cuniculus | Mutation(s): 0 EC: 5.4.2.2 |  | |
UniProt | |||||
Find proteins for P00949 (Oryctolagus cuniculus) Explore P00949 Go to UniProtKB: P00949 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00949 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CD Query on CD | C [auth A], E [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | D [auth A], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A, B | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.244
- R-Value Work: 0.186
- R-Value Observed: 0.186
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 174.42 | α = 90 |
| b = 174.42 | β = 90 |
| c = 101.12 | γ = 90 |
| Software Name | Purpose |
|---|---|
| X-PLOR | model building |
| X-PLOR | refinement |
| XDS | data reduction |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1997-03-12 Deposition Author(s): Ray Junior, W.J., Baranidharan, S., Liu, Y.
Revision History (Full details and data files)
- Version 1.0: 1997-03-12
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-09
Changes: Database references, Derived calculations, Other, Refinement description
