1J8R

BINARY COMPLEX OF THE PAPG RECEPTOR-BINDING DOMAIN BOUND TO GBO4 RECEPTOR

PDB DOI: https://doi.org/10.2210/pdb1J8R/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Escherichia coli
Mutation(s): No

Deposited: 2001-05-22 Released: 2001-06-22
Deposition Author(s): Dodson, K.W., Pinkner, J.S., Rose, T., Magnusson, G., Hultgren, S.J., Waksman, G., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.242
R-Value Work: 0.220
R-Value Observed: 0.220

wwPDB Validation 3D Report Full Report

This is version 2.0 of the entry. See complete history.

Macromolecule Content

Total Structure Weight: 23.48 kDa
Atom Count: 1,835
Modelled Residue Count: 196
Deposited Residue Count: 196
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PYELONEPHRITIC ADHESIN	A	196	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for Q47450 (Escherichia coli) Explore Q47450 Go to UniProtKB: Q47450
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q47450
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

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Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose	B	4		N/A	Interactions Focus chain B
Glycosylation Resources
GlyTouCan: G00061MO GlyCosmos: G00061MO GlyGen: G00061MO

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.242
R-Value Work: 0.220
R-Value Observed: 0.220
Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.08	α = 90
b = 79.672	β = 90
c = 158.028	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2001-06-22

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2001-06-22
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary

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Deposit Data

Help and Resources

1J8R

BINARY COMPLEX OF THE PAPG RECEPTOR-BINDING DOMAIN BOUND TO GBO4 RECEPTOR

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Entity ID: 2

Glycosylation Resources

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)