Download MendeleyCrystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1J6O
Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1J6O/pdb
- Classification: HYDROLASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2002-07-09 Released: 2002-10-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.224
- R-Value Work: 0.190
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TatD-related deoxyribonuclease | 268 | Thermotoga maritima | Mutation(s): 1 Gene Names: TM0667 EC: 3.1.21 |  | |
UniProt | |||||
Find proteins for Q9WZD5 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WZD5 Go to UniProtKB: Q9WZD5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WZD5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IPA Query on IPA | B [auth A] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.224
- R-Value Work: 0.190
- R-Value Observed: 0.190
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M31J6O
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.05 | α = 90 |
| b = 77.25 | β = 90 |
| c = 84.53 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| MOSFLM | data reduction |
| SCALA | data scaling |
| CCP4 | data reduction |
| SnB | phasing |
| MLPHARE | phasing |
| CCP4 | model building |
| SOLVE | phasing |
| CNS | refinement |
| CCP4 | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2002-10-30 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2002-10-30
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-07-18
Changes: Advisory, Data collection, Database references - Version 1.4: 2023-01-25
Changes: Advisory, Database references, Derived calculations
