STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN     DOI:10.2210/pdb1ibl/pdb   NDB ID: RR0029

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Primary Citation       Molecular Description Hide Classification: Ribosome Structure Weight: 795124.43   Molecule: 16S RIBOSOMAL RNA Polymer: 1 Type: polyribonucleotide Length: 1522 Chains: A Molecule: P-SITE MESSENGER RNA FRAGMENT Polymer: 2 Type: polyribonucleotide Length: 6 Chains: X Molecule: ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA Polymer: 3 Type: polyribonucleotide Length: 15 Chains: Y Molecule: A-SITE MESSENGER RNA FRAGMENT Polymer: 4 Type: polyribonucleotide Length: 4 Chains: Z Molecule: 30S RIBOSOMAL PROTEIN S2 Polymer: 5 Type: polypeptide(L) Length: 256 Chains: B Molecule: 30S RIBOSOMAL PROTEIN S3 Polymer: 6 Type: polypeptide(L) Length: 239 Chains: C Molecule: 30S RIBOSOMAL PROTEIN S4 Polymer: 7 Type: polypeptide(L) Length: 209 Chains: D Molecule: 30S RIBOSOMAL PROTEIN S5 Polymer: 8 Type: polypeptide(L) Length: 162 Chains: E Molecule: 30S RIBOSOMAL PROTEIN S6 Polymer: 9 Type: polypeptide(L) Length: 101 Chains: F Molecule: 30S RIBOSOMAL PROTEIN S7 Polymer: 10 Type: polypeptide(L) Length: 156 Chains: G Molecule: 30S RIBOSOMAL PROTEIN S8 Polymer: 11 Type: polypeptide(L) Length: 138 Chains: H Molecule: 30S RIBOSOMAL PROTEIN S9 Polymer: 12 Type: polypeptide(L) Length: 128 Chains: I Molecule: 30S RIBOSOMAL PROTEIN S10 Polymer: 13 Type: polypeptide(L) Length: 105 Chains: J Molecule: 30S RIBOSOMAL PROTEIN S11 Polymer: 14 Type: polypeptide(L) Length: 129 Chains: K Molecule: 30S RIBOSOMAL PROTEIN S12 Polymer: 15 Type: polypeptide(L) Length: 135 Chains: L Molecule: 30S RIBOSOMAL PROTEIN S13 Polymer: 16 Type: polypeptide(L) Length: 126 Chains: M Molecule: 30S RIBOSOMAL PROTEIN S14 Polymer: 17 Type: polypeptide(L) Length: 61 Chains: N Molecule: 30S RIBOSOMAL PROTEIN S15 Polymer: 18 Type: polypeptide(L) Length: 89 Chains: O Molecule: 30S RIBOSOMAL PROTEIN S16 Polymer: 19 Type: polypeptide(L) Length: 88 Chains: P Molecule: 30S RIBOSOMAL PROTEIN S17 Polymer: 20 Type: polypeptide(L) Length: 105 Chains: Q Molecule: 30S RIBOSOMAL PROTEIN S18 Polymer: 21 Type: polypeptide(L) Length: 88 Chains: R Molecule: 30S RIBOSOMAL PROTEIN S19 Polymer: 22 Type: polypeptide(L) Length: 93 Chains: S Molecule: 30S RIBOSOMAL PROTEIN S20 Polymer: 23 Type: polypeptide(L) Length: 106 Chains: T Molecule: 30S RIBOSOMAL PROTEIN THX Polymer: 24 Type: polypeptide(L) Length: 26 Chains: V       Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Polymer: 2 Scientific Name: Synthetic construct   Polymer: 3 Scientific Name: Synthetic construct   Polymer: 4 Scientific Name: Synthetic construct   Polymer: 5 Scientific Name: Thermus thermophilus   Polymer: 6 Scientific Name: Thermus thermophilus   Polymer: 7 Scientific Name: Thermus thermophilus   Polymer: 8 Scientific Name: Thermus thermophilus   Polymer: 9 Scientific Name: Thermus thermophilus   Polymer: 10 Scientific Name: Thermus thermophilus   Polymer: 11 Scientific Name: Thermus thermophilus   Polymer: 12 Scientific Name: Thermus thermophilus   Polymer: 13 Scientific Name: Thermus thermophilus   Polymer: 14 Scientific Name: Thermus thermophilus   Polymer: 15 Scientific Name: Thermus thermophilus   Polymer: 16 Scientific Name: Thermus thermophilus   Polymer: 17 Scientific Name: Thermus thermophilus   Polymer: 18 Scientific Name: Thermus thermophilus   Polymer: 19 Scientific Name: Thermus thermophilus   Polymer: 20 Scientific Name: Thermus thermophilus   Polymer: 21 Scientific Name: Thermus thermophilus   Polymer: 22 Scientific Name: Thermus thermophilus   Polymer: 23 Scientific Name: Thermus thermophilus   Polymer: 24 Scientific Name: Thermus thermophilus         Related PDB Entries Hide Id Details 1FJF  NATIVE STRUCTURE OF THE 30S PARTICLE  1FJG  STRUCTURE OF THE 30S PARTICLE IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN AND PAROMOMYCIN  1IBK  STRUCTURE OF THE 30S PARTICLE IN COMPLEX WITH P-SITE MESSENGER RNA FRAGMENT AND WITH THE ANTIBIOTIC PAROMOMYCIN  1IBM  STRUCTURE OF THE 30S PARTICLE IN COMPLEX WITH MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND TO THE A SITE        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links MG     MAGNESIUM ION Mg Ligand Explorer PAR     PAROMOMYCIN C23 H45 N5 O14 Ligand Explorer ZN     ZINC ION Zn Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (20 Domains) CATH Classification v3.2.0 - (23 Domains) PFAM Classification - (23 Domains) GO Terms - (152 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Ogle, J.M.,   Brodersen, D.E.,   Clemons Jr., W.M.,   Tarry, M.J.,   Carter, A.P.,   Ramakrishnan, V. Deposition:   2001-03-28 Release:   2001-05-04 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 3.11 R-Value: 0.232 (work) R-Free: 0.275 Space Group: P 41 21 2 Unit Cell:   Length [Å] Angles [°] a = 400.80 α = 90.00  b = 400.80 β = 90.00  c = 175.88 γ = 90.00        Structure Links Hide Molecule of the Month Features: Ribosome 70S Ribosomes