1GM6
3-D STRUCTURE OF A SALIVARY LIPOCALIN FROM BOAR
- PDB DOI: https://doi.org/10.2210/pdb1GM6/pdb
- Classification: ODORANT-BINDING PROTEIN
- Organism(s): Sus scrofa
- Mutation(s): No
- Deposited: 2001-09-11 Released: 2002-05-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.282
- R-Value Work: 0.254
- R-Value Observed: 0.254
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SALIVARY LIPOCALIN | 175 | Sus scrofa | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P81608 (Sus scrofa) Explore P81608 Go to UniProtKB: P81608 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P81608 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| CD Query on CD | B [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.282
- R-Value Work: 0.254
- R-Value Observed: 0.254
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.112 | α = 90 |
| b = 70.112 | β = 90 |
| c = 71.75 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALA | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2002-05-30 Deposition Author(s): Spinelli, S., Vincent, F., Pelosi, P., Tegoni, M., Cambillau, C.
Revision History (Full details and data files)
- Version 1.0: 2002-05-30
Type: Initial release - Version 1.1: 2011-09-07
Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary
