1G7Y
THE CRYSTAL STRUCTURE OF THE 58KD VEGETATIVE LECTIN FROM THE TROPICAL LEGUME DOLICHOS BIFLORUS
- PDB DOI: https://doi.org/10.2210/pdb1G7Y/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Vigna cylindrica
- Mutation(s): No 
- Deposited: 2000-11-15 Released: 2000-11-29 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.247 
- R-Value Work: 0.221 
- R-Value Observed: 0.221 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
STEM/LEAF LECTIN DB58 | 253 | Vigna cylindrica | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P19588 (Vigna unguiculata subsp. cylindrica) Explore P19588  Go to UniProtKB:  P19588 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P19588 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN Query on MN | K [auth A] M [auth B] O [auth C] Q [auth D] S [auth E] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | J [auth A] L [auth B] N [auth C] P [auth D] R [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.247 
- R-Value Work: 0.221 
- R-Value Observed: 0.221 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 100.941 | α = 90 |
b = 130.272 | β = 90 |
c = 137.124 | γ = 90 |
Software Name | Purpose |
---|---|
AMoRE | phasing |
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
Entry History 
Deposition Data
- Released Date: 2000-11-29  Deposition Author(s): Buts, L., Hamelryck, T.W., Loris, R., Dao-Thi, M.-H., Wyns, L., Etzler, M.E.
Revision History (Full details and data files)
- Version 1.0: 2000-11-29
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary