1E03

Deposited: 2000-03-09 Released: 2000-06-02
Deposition Author(s): McCoy, A.J., Jin, L., Abrahams, J.-P., Skinner, R., Carrell, R.W.

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 2.1 of the entry. See complete history.

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ANTITHROMBIN-III	A [auth I], B [auth L]	432	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01008 (Homo sapiens) Explore P01008 Go to UniProtKB: P01008
PHAROS: P01008 GTEx: ENSG00000117601
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P01008
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C [auth A]	2		N-Glycosylation	Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	D [auth B], E [auth C], F [auth D]	3		N-Glycosylation	Interactions Focus chain D [auth B] Focus chain E [auth C] Focus chain F [auth D] Interactions & Density Focus chain D [auth B] Focus chain E [auth C] Focus chain F [auth D]
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside	G [auth E], H [auth F]	5		N/A	Interactions Focus chain G [auth E] Focus chain H [auth F] Interactions & Density Focus chain G [auth E] Focus chain H [auth F]
Glycosylation Resources
GlyTouCan: G76630SM GlyCosmos: G76630SM

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain I SDF format, chain J [auth L] MOL2 format, chain I MOL2 format, chain J [auth L]	I, J [auth L]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain I Focus chain J [auth L] Interactions & Density Focus chain I Focus chain J [auth L]

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 4
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_900031 Query on PRD_900031	G [auth E], H [auth F]	heparin pentasaccharide	Oligosaccharide / Anticoagulant		Interactions Focus chain G [auth E] Focus chain H [auth F] Interactions & Density Focus chain G [auth E] Focus chain H [auth F]

Experimental Data & Validation

Unit Cell:

Software Package:

Entry History

Deposition Author(s):

McCoy, A.J.

Version 1.0: 2000-06-02
Type: Initial release
Version 1.1: 2011-05-07
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Other, Structure summary
Version 2.1: 2023-12-06
Changes: Data collection, Database references, Refinement description, Structure summary