Download MendeleyStructural Basis of Iron Uptake in the Pathogen Neisseria gonorrhoeae
McRee, D.E., Bruns, C.M., Williams, P.A., Mietzner, T.A., Nunn, R.To be published.
1D9Y
NEISSERIA GONORRHOEAE FERRIC BINDING PROTEIN
- PDB DOI: https://doi.org/10.2210/pdb1D9Y/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Neisseria gonorrhoeae
- Mutation(s): No
- Deposited: 1999-10-30 Released: 1999-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.377
- R-Value Work: 0.231
- R-Value Observed: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PROTEIN (PERIPLASMIC IRON-BINDING PROTEIN) | 309 | Neisseria gonorrhoeae | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q50964 (Neisseria gonorrhoeae) Explore Q50964 Go to UniProtKB: Q50964 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q50964 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| FE Query on FE | B [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.377
- R-Value Work: 0.231
- R-Value Observed: 0.185
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.583 | α = 90 |
| b = 111.009 | β = 90 |
| c = 140.423 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| SHELXL-97 | refinement |
| MAR345 | data collection |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 1999-11-17 Deposition Author(s): McRee, D.E., Bruns, C.M., Williams, P.A., Mietzner, T.A., Nunn, R.
Revision History (Full details and data files)
- Version 1.0: 1999-11-17
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-04
Changes: Advisory, Refinement description - Version 1.4: 2024-02-07
Changes: Advisory, Data collection, Database references, Derived calculations
