1C47
BINDING DRIVEN STRUCTURAL CHANGES IN CRYSTALINE PHOSPHOGLUCOMUTASE ASSOCIATED WITH CHEMICAL REACTION
- PDB DOI: https://doi.org/10.2210/pdb1C47/pdb
- Classification: TRANSFERASE
- Organism(s): Oryctolagus cuniculus
- Mutation(s): No
- Deposited: 1999-08-11 Released: 1999-08-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.248
- R-Value Work: 0.183
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE PHOSPHOTRANSFERASE | 561 | Oryctolagus cuniculus | Mutation(s): 0 EC: 2.7.5.1 |  | |
UniProt | |||||
Find proteins for P00949 (Oryctolagus cuniculus) Explore P00949 Go to UniProtKB: P00949 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00949 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G16 Query on G16 | C [auth A] | 1,6-di-O-phosphono-alpha-D-glucopyranose C6 H13 O12 P2 RWHOZGRAXYWRNX-VFUOTHLCSA-M |  | ||
| CD Query on CD | D [auth A], E [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.248
- R-Value Work: 0.183
- R-Value Observed: 0.183
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 174.42 | α = 90 |
| b = 174.42 | β = 90 |
| c = 101.1 | γ = 90 |
| Software Name | Purpose |
|---|---|
| O | model building |
| X-PLOR | model building |
| X-PLOR | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1999-08-13 Deposition Author(s): Baranidharan, S., Ray Jr., W.J.
Revision History (Full details and data files)
- Version 1.0: 1999-08-13
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2023-08-09
Changes: Data collection, Database references, Refinement description, Structure summary
