1BP2

STRUCTURE OF BOVINE PANCREATIC PHOSPHOLIPASE A2 AT 1.7 ANGSTROMS RESOLUTION

PDB DOI: https://doi.org/10.2210/pdb1BP2/pdb

Classification: HYDROLASE
Organism(s): Bos taurus
Mutation(s): No

Deposited: 1981-04-06 Released: 1981-05-21
Deposition Author(s): Dijkstra, B.W., Kalk, K.H., Hol, W.G.J., Drenth, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Work: 0.171

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structure of bovine pancreatic phospholipase A2 at 1.7A resolution.

Dijkstra, B.W., Kalk, K.H., Hol, W.G., Drenth, J.

(1981) J Mol Biol 147: 97-123

PubMed: 7265241 Search on PubMed
DOI: https://doi.org/10.1016/0022-2836(81)90081-4
Primary Citation of Related Structures:
1BP2

Macromolecule Content

Total Structure Weight: 14.09 kDa
Atom Count: 1,080
Modelled Residue Count: 123
Deposited Residue Count: 123
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PHOSPHOLIPASE A2	A	123	Bos taurus	Mutation(s): 0 EC: 3.1.1.4
UniProt
Find proteins for P00593 (Bos taurus) Explore P00593 Go to UniProtKB: P00593
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00593
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A]	C [auth A], D [auth A]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A]
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Work: 0.171
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.07	α = 90
b = 64.45	β = 90
c = 38.15	γ = 90

Software Package:

Software Name	Purpose
AGARWAL	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1981-05-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1981-05-21
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-11-29
Changes: Derived calculations, Other

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.