1BG3
RAT BRAIN HEXOKINASE TYPE I COMPLEX WITH GLUCOSE AND INHIBITOR GLUCOSE-6-PHOSPHATE
- PDB DOI: https://doi.org/10.2210/pdb1BG3/pdb
- Classification: HEXOKINASE
- Organism(s): Rattus norvegicus
- Mutation(s): No
- Deposited: 1998-06-04 Released: 1999-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.251
- R-Value Work: 0.196
- R-Value Observed: 0.196
This is version 1.5 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HEXOKINASE | 918 | Rattus norvegicus | Mutation(s): 0 EC: 2.7.1.1 |  | |
UniProt | |||||
Find proteins for P05708 (Rattus norvegicus) Explore P05708 Go to UniProtKB: P05708 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P05708 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G6P Query on G6P | D [auth A], F [auth A], I [auth B], K [auth B] | 6-O-phosphono-alpha-D-glucopyranose C6 H13 O9 P NBSCHQHZLSJFNQ-DVKNGEFBSA-N |  | ||
| BGC Query on BGC | C [auth A], E [auth A], H [auth B], J [auth B] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | ||
| CA Query on CA | G [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.251
- R-Value Work: 0.196
- R-Value Observed: 0.196
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 132.1 | α = 90 |
| b = 77.1 | β = 96 |
| c = 137.1 | γ = 90 |
| Software Name | Purpose |
|---|---|
| X-PLOR | model building |
| X-PLOR | refinement |
| R-AXIS | data reduction |
| R-AXIS | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1999-06-08 Deposition Author(s): Mulichak, A.M., Garavito, R.M.
Revision History (Full details and data files)
- Version 1.0: 1999-06-08
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Other, Structure summary - Version 1.4: 2024-02-07
Changes: Data collection, Database references, Structure summary - Version 1.5: 2024-04-03
Changes: Refinement description
