1BFN
BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX
- PDB DOI: https://doi.org/10.2210/pdb1BFN/pdb
- Classification: HYDROLASE
- Organism(s): Glycine max
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 1998-05-22 Released: 1998-10-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.07 Å
- R-Value Free: 0.211
- R-Value Work: 0.158
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BETA-AMYLASE | 495 | Glycine max | Mutation(s): 2 EC: 3.2.1.2 |  | |
UniProt | |||||
Find proteins for P10538 (Glycine max) Explore P10538 Go to UniProtKB: P10538 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P10538 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900012 Query on PRD_900012 | B | beta-cyclodextrin | Oligosaccharide / Drug delivery |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.07 Å
- R-Value Free: 0.211
- R-Value Work: 0.158
- R-Value Observed: 0.158
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.03 | α = 90 |
| b = 86.03 | β = 90 |
| c = 144.8 | γ = 120 |
| Software Name | Purpose |
|---|---|
| X-PLOR | model building |
| X-PLOR | refinement |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1998-10-28 Deposition Author(s): Adachi, M., Mikami, B., Katsube, T., Utsumi, S.
Revision History (Full details and data files)
- Version 1.0: 1998-10-28
Type: Initial release - Version 1.1: 2008-03-03
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Other, Structure summary - Version 2.1: 2024-02-07
Changes: Data collection, Database references, Structure summary
