Download MendeleyA Positively Charged Residue Bound in the Minor Groove Does not Alter the Bending of a DNA Duplex
Glasfeld, A., Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.(1996) J Am Chem Soc 118: 13073-13074
1BDI
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
- PDB DOI: https://doi.org/10.2210/pdb1BDI/pdb
- NAKB: 1BDI
- Classification: TRANSCRIPTION/DNA
- Organism(s): Escherichia coli
- Mutation(s): No
- Deposited: 1996-07-25 Released: 1997-04-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Observed: 0.157
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PROTEIN (PURINE REPRESSOR) | B [auth A] | 340 | Escherichia coli | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P0ACP7 (Escherichia coli (strain K12)) Explore P0ACP7 Go to UniProtKB: P0ACP7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0ACP7 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3') | A [auth B] | 17 | N/A |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HPA Query on HPA | C [auth A] | HYPOXANTHINE C5 H4 N4 O FDGQSTZJBFJUBT-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Observed: 0.157
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 176.16 | α = 90 |
| b = 94.99 | β = 90 |
| c = 81.57 | γ = 90 |
| Software Name | Purpose |
|---|---|
| TNT | refinement |
| UCSD | data reduction |
Entry History
Deposition Data
- Released Date: 1997-04-21 Deposition Author(s): Glasfeld, A., Schumacher, M.A., Choi, K.Y., Zalkin, H., Brennan, R.G.
Revision History (Full details and data files)
- Version 1.0: 1997-04-21
Type: Initial release - Version 1.1: 2008-05-22
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-02-07
Changes: Data collection, Database references, Derived calculations
