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Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
 
 
DOI:10.2210/pdb1yls/pdb   NDB ID: UR0055
1YLS
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: RNA
    Structure Weight: 33541.98
     
    Molecule:RNA Diels-Alder ribozyme
    Polymer:1Type:polyribonucleotideLength:11
    Chains:A, C
    Other Details:11-mer
    Molecule:RNA Diels-Alder ribozyme
    Polymer:2Type:polyribonucleotideLength:38
    Chains:B, D
    Mutation:A27G
    Other Details:38-mer
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1YKQ  Crystal structure of Diels-Alder ribozyme 
    1YKV  Crystal structure of Diels-Alder ribozyme complexed with the reaction product 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DAI     (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A- TETRAHYDRO-4,9[1',2']-BENZENO-1H
    -BENZ[F]ISOINDOLE- 1,3(2H)-DIONE     		C24 H25 N O3 3DLigand Explorer Link out to Ligand Expos:DAI Link out to SuperLigands:DAI Link out to SuperHapten:DAI
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    UMS 2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE (parent: DU)(type: dnaLinking) C10 H15 N2 O8 P Se Link out to Ligand Expos:UMS Link out to SuperLigands:UMS Link out to SuperHapten:UMS 2D
    CSL (D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-PHOSPHATE (parent: DC)(type: dnaLinking) C10 H16 N3 O7 P Se Link out to Ligand Expos:CSL Link out to SuperLigands:CSL Link out to SuperHapten:CSL 2D
     
     
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Biological assembly 1 assigned by authors