Download MendeleyCrystal structure of 2,5-diketo-D-gluconic acid reductase (TM1009) from Thermotoga maritima at 2.40 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VP5
Crystal structure of 2,5-diketo-D-gluconic acid reductase (TM1009) from Thermotoga maritima at 2.40 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1VP5/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermotoga maritima MSB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-10-13 Released: 2004-10-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.203
- R-Value Work: 0.151
- R-Value Observed: 0.154
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2,5-diketo-D-gluconic acid reductase | 298 | Thermotoga maritima MSB8 | Mutation(s): 0 Gene Names: TM1009 EC: 1.1.1.274 |  | |
UniProt | |||||
Find proteins for Q9X0A2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0A2 Go to UniProtKB: Q9X0A2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X0A2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | C [auth A], D [auth B] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.203
- R-Value Work: 0.151
- R-Value Observed: 0.154
- Space Group: P 65
- Diffraction Data: https://doi.org/10.18430/M31VP5
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.314 | α = 90 |
| b = 94.314 | β = 90 |
| c = 146.855 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2004-10-26 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-10-26
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-11
Changes: Data collection - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
