1R1N

Tri-nuclear oxo-iron clusters in the ferric binding protein from N. gonorrhoeae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.167 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Oxo-iron clusters in a bacterial iron-trafficking protein: new roles for a conserved motif.

Zhu, H.Alexeev, D.Hunter, D.J.Campopiano, D.J.Sadler, P.J.

(2003) Biochem J 376: 35-41

  • DOI: https://doi.org/10.1042/BJ20031283
  • Primary Citation of Related Structures:  
    1R1N

  • PubMed Abstract: 

    We report a set of three 1.8-1.9 A resolution X-ray crystal structures of Neisseria gonorrhoeae Fbp (ferric-ion binding protein): (i) open-cleft apo-Fbp containing bound phosphate, (ii) open-cleft mono-Fe Fbp capped by nitrilotriacetate, and (iii) open-cleft trinuclear oxo-iron Fbp, the first structure of an iron-cluster adduct of a transferrin. The nine independent molecules in the unit cells provide 'snapshots' of the versatile dynamic structural roles of the conserved dityrosyl iron-binding motif (Tyr195-Tyr196) which control the capture and, possibly, processing of iron. These findings have implications for understanding bacterial iron acquisition and dissimilation, and organic/mineral interfaces.


  • Organizational Affiliation

    School of Chemistry, University of Edinburgh, West Mains Road, Edinburgh EH9 3JJ, Scotland, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferric-iron Binding Protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I
309Neisseria gonorrhoeaeMutation(s): 0 
UniProt
Find proteins for P17259 (Neisseria gonorrhoeae)
Explore P17259 
Go to UniProtKB:  P17259
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17259
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.167 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 146.5α = 90
b = 146.5β = 90
c = 114.969γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-03-09
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-08-23
    Changes: Data collection, Database references, Derived calculations, Refinement description