1QLF
MHC CLASS I H-2DB COMPLEXED WITH GLYCOPEPTIDE K3G
- PDB DOI: https://doi.org/10.2210/pdb1QLF/pdb
- Classification: IMMUNE SYSTEM/PEPTIDE
- Organism(s): Mus musculus, Homo sapiens, Respirovirus muris
- Expression System: Cricetulus griseus
- Mutation(s): Yes 
- Deposited: 1999-08-30 Released: 1999-09-01 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.267 
- R-Value Work: 0.204 
- R-Value Observed: 0.204 
wwPDB Validation   3D Report Full Report
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MHC CLASS I H-2DB HEAVY CHAIN | 276 | Mus musculus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P01899 (Mus musculus) Explore P01899  Go to UniProtKB:  P01899 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01899 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HUMAN BETA-2-MICROGLOBULIN | 99 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
SYNTHETIC GLYCOPEPTIDE | 9 | Respirovirus muris | Mutation(s): 1  | ||
UniProt | |||||
Find proteins for P04857 (Sendai virus (strain Enders)) Explore P04857  Go to UniProtKB:  P04857 | |||||
Entity Groups   | |||||
UniProt Group | P04857 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | G [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | D [auth A], F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.267 
- R-Value Work: 0.204 
- R-Value Observed: 0.204 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 61.073 | α = 90 |
b = 58.272 | β = 108.57 |
c = 77.146 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 1999-09-01  Deposition Author(s): Tormo, J., Jones, E.Y.
Revision History (Full details and data files)
- Version 1.0: 1999-09-01
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-07-12
Changes: Derived calculations - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.5: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary