1OGS
human acid-beta-glucosidase
- PDB DOI: https://doi.org/10.2210/pdb1OGS/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No 
- Membrane Protein: Yes  OPM
- Deposited: 2003-05-13 Released: 2003-07-03 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.230 
- R-Value Work: 0.195 
- R-Value Observed: 0.195 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glucosylceramidase | 497 | Homo sapiens | Mutation(s): 0  Gene Names: GBA, GC, GLUC EC: 3.2.1.45 (PDB Primary Data), 2.4.1 (PDB Primary Data), 3.2.1.104 (PDB Primary Data) Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04062 (Homo sapiens) Explore P04062  Go to UniProtKB:  P04062 | |||||
PHAROS:  P04062 GTEx:  ENSG00000177628  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04062 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | N [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.230 
- R-Value Work: 0.195 
- R-Value Observed: 0.195 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 107.735 | α = 90 |
b = 285.232 | β = 90 |
c = 91.678 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
SHARP | phasing |
Entry History 
Deposition Data
- Released Date: 2003-07-03  Deposition Author(s): Dvir, H., Harel, M., McCarthy, A.A., Toker, L., Silman, I., Futerman, A.H., Sussman, J.L.
Revision History (Full details and data files)
- Version 1.0: 2003-07-03
Type: Initial release - Version 1.1: 2012-01-25
Changes: Advisory, Atomic model, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance - Version 1.2: 2019-10-16
Changes: Data collection, Database references, Derived calculations, Experimental preparation, Other, Source and taxonomy, Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary