1OAN
Crystal structure of the dengue 2 virus envelope protein
- PDB DOI: https://doi.org/10.2210/pdb1OAN/pdb
- Classification: GLYCOPROTEIN
- Organism(s): dengue virus type 2
- Expression System: Drosophila melanogaster
- Mutation(s): No
- Deposited: 2003-01-16 Released: 2003-05-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.296
- R-Value Work: 0.261
- R-Value Observed: 0.261
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ENVELOPE GLYCOPROTEIN | 394 | dengue virus type 2 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P12823 (Dengue virus type 2 (strain Puerto Rico/PR159-S1/1969)) Explore P12823 Go to UniProtKB: P12823 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12823 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | C, D | 4 |  | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan: G32152BH GlyCosmos: G32152BH GlyGen: G32152BH | |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | F [auth A], G [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| NA Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.296
- R-Value Work: 0.261
- R-Value Observed: 0.261
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.541 | α = 90 |
| b = 81.541 | β = 90 |
| c = 288.623 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2003-05-16 Deposition Author(s): Modis, Y., Harrison, S.C.
Revision History (Full details and data files)
- Version 1.0: 2003-05-16
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary
