1N7S

High Resolution Structure of a Truncated Neuronal SNARE Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

High Resolution Structure, Stability, and Synaptotagmin Binding of a Truncated Neuronal SNARE Complex

Ernst, J.A.Brunger, A.T.

(2003) J Biol Chem 278: 8630-8636

  • DOI: https://doi.org/10.1074/jbc.M211889200
  • Primary Citation of Related Structures:  
    1N7S

  • PubMed Abstract: 

    The structure of a truncated SNARE complex has been solved to 1.4-A resolution revealing a stabilizing salt bridge, sites of hydration, and conformational variability of the ionic central layer that were not observed in a previously published structure at 2.4-A resolution (Sutton, R. B., Fasshauer, D., Jahn, R., and Brunger, A. T. (1998) Nature 395, 347-353). The truncated complex lacks residues involved in phospholipid binding and denatures at a lower temperature than longer complexes as assessed by SDS and circular dichroism thermal melts. The truncated SNARE complex is monomeric, and it retains binding to synaptotagmin I.


  • Organizational Affiliation

    Howard Hughes Medical Institute, Stanford University, California 94305, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
vesicle-associated membrane protein 263Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P63045 (Rattus norvegicus)
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Go to UniProtKB:  P63045
Entity Groups  
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UniProt GroupP63045
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Syntaxin 1A68Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P32851 (Rattus norvegicus)
Explore P32851 
Go to UniProtKB:  P32851
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UniProt GroupP32851
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
SNAP-25A79Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P60881 (Rattus norvegicus)
Explore P60881 
Go to UniProtKB:  P60881
Entity Groups  
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UniProt GroupP60881
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
SNAP-25A66Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P60881 (Rattus norvegicus)
Explore P60881 
Go to UniProtKB:  P60881
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60881
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.201 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.767α = 90
b = 51.75β = 90
c = 132.938γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
CNSrefinement
HKL-2000data reduction
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-12-27
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-01-31
    Changes: Experimental preparation
  • Version 1.4: 2024-02-14
    Changes: Data collection, Database references, Derived calculations, Refinement description