1LK3

ENGINEERED HUMAN INTERLEUKIN-10 MONOMER COMPLEXED TO 9D7 FAB FRAGMENT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Noncompetitive antibody neutralization of IL-10 revealed by protein engineering and x-ray crystallography.

Josephson, K.Jones, B.C.Walter, L.J.DiGiacomo, R.Indelicato, S.R.Walter, M.R.

(2002) Structure 10: 981-987

  • DOI: https://doi.org/10.1016/s0969-2126(02)00791-8
  • Primary Citation of Related Structures:  
    1LK3

  • PubMed Abstract: 

    IL-10 is a dimeric cytokine that must engage its high-affinity cell surface receptor, IL-10R1, to induce multiple cellular activities. Here we report the 1.9 A crystal structure of an engineered IL-10 monomer (IL-10M1) in complex with a neutralizing Fab fragment (9D7Fab). 9D7Fab and IL-10R1 bind distinct nonoverlapping surfaces on IL-10M1. Antagonism of the IL-10M1/IL-10R1 interaction is the result of 9D7Fab-induced conformational changes in the CD loop of IL-10M1 that indirectly alter the structure of the IL-10R1 binding site. A single mutation (Ile87Ala) in the same CD loop region of the Epstein-Barr virus IL-10 (ebvIL-10) also reduces IL-10R1 binding affinity, suggesting that ebvIL-10 and 9D7Fab use similar allosteric mechanisms to modulate IL-10R1 affinity and biological activity.


  • Organizational Affiliation

    Center for Biophysical Sciences and Engineering, University of Alabama, Birmingham, 35294, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-10A,
D [auth B]
160Homo sapiensMutation(s): 0 
Gene Names: IL10
UniProt & NIH Common Fund Data Resources
Find proteins for P22301 (Homo sapiens)
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Go to UniProtKB:  P22301
PHAROS:  P22301
GTEx:  ENSG00000136634 
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UniProt GroupP22301
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
9D7 Light ChainB [auth L],
E [auth M]
210Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P01835 (Rattus norvegicus)
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Go to UniProtKB:  P01835
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UniProt GroupP01835
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
9D7 Heavy ChainC [auth H],
F [auth I]
219Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P20759 (Rattus norvegicus)
Explore P20759 
Go to UniProtKB:  P20759
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UniProt GroupP20759
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.187 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.554α = 90
b = 75.616β = 96.85
c = 111.975γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing
CNSrefinement
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-07-17
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance