1LCS
RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS
- PDB DOI: https://doi.org/10.2210/pdb1LCS/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Feline leukemia virus strain B/lambda-B1
- Expression System: Spodoptera frugiperda
- Mutation(s): No 
- Deposited: 2002-04-06 Released: 2003-04-08 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.264 
- R-Value Work: 0.216 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN | 211 | Feline leukemia virus strain B/lambda-B1 | Mutation(s): 0  Gene Names: ENV | ||
UniProt | |||||
Find proteins for P11261 (Feline leukemia virus (strain B/lambda-B1)) Explore P11261  Go to UniProtKB:  P11261 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11261 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C, D, E | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G02577WH GlyCosmos:  G02577WH |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TOE Query on TOE | G [auth A] | 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL C7 H16 O4 JLGLQAWTXXGVEM-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.264 
- R-Value Work: 0.216 
- Space Group: P 65 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 93.4 | α = 90 |
b = 93.4 | β = 90 |
c = 231.5 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |
CNS | refinement |
Entry History 
Deposition Data
- Released Date: 2003-04-08  Deposition Author(s): Barnett, A.L., Wensel, D.L., Li, W., Fass, D., Cunningham, J.M.
Revision History (Full details and data files)
- Version 1.0: 2003-04-08
Type: Initial release - Version 1.1: 2008-04-28
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2011-11-16
Changes: Atomic model - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-08-16
Changes: Data collection, Database references, Refinement description, Structure summary