1KCW
X-RAY CRYSTAL STRUCTURE OF HUMAN CERULOPLASMIN AT 3.0 ANGSTROMS
- PDB DOI: https://doi.org/10.2210/pdb1KCW/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Mutation(s): No 
- Deposited: 1996-09-25 Released: 1997-02-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.286 
- R-Value Work: 0.220 
- R-Value Observed: 0.220 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
CERULOPLASMIN | 1,046 | Homo sapiens | Mutation(s): 0  EC: 1.16.3.1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00450 (Homo sapiens) Explore P00450  Go to UniProtKB:  P00450 | |||||
PHAROS:  P00450 GTEx:  ENSG00000047457  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00450 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A], C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CU Query on CU | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
O Query on O | L [auth A], M [auth A] | OXYGEN ATOM O XLYOFNOQVPJJNP-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.286 
- R-Value Work: 0.220 
- R-Value Observed: 0.220 
- Space Group: P 32 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 213.92 | α = 90 |
b = 213.92 | β = 90 |
c = 85.63 | γ = 120 |
Software Name | Purpose |
---|---|
MOSFLM | data reduction |
ROTAVATA | data reduction |
X-PLOR | model building |
X-PLOR | refinement |
CCP4 | data scaling |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 1997-02-12  Deposition Author(s): Card, G.L., Zaitsev, V.N., Lindley, P.F.
Revision History (Full details and data files)
- Version 1.0: 1997-02-12
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary