Download MendeleyCrystal structure of aspartate dehydrogenase (TM1643) from Thermotoga maritima at 1.9 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1J5P
Crystal structure of aspartate dehydrogenase (TM1643) from Thermotoga maritima at 1.9 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1J5P/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2002-06-27 Released: 2002-07-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.260
- R-Value Work: 0.224
- R-Value Observed: 0.224
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ASPARTATE DEHYDROGENASE | 253 | Thermotoga maritima | Mutation(s): 0 Gene Names: TM1643 EC: 1.4.3.16 |  | |
UniProt | |||||
Find proteins for Q9X1X6 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X1X6 Go to UniProtKB: Q9X1X6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X1X6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.260
- R-Value Work: 0.224
- R-Value Observed: 0.224
- Space Group: P 41 21 2
- Diffraction Data: https://doi.org/10.18430/M31J5P
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.2 | α = 90 |
| b = 63.2 | β = 90 |
| c = 126.2 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALA | data scaling |
| CCP4 | data reduction |
| SOLVE | phasing |
| RESOLVE | model building |
| CNS | refinement |
| CCP4 | data scaling |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2002-07-10 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2002-07-10
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2018-07-18
Changes: Advisory, Data collection, Database references - Version 1.4: 2023-01-25
Changes: Advisory, Database references, Derived calculations
