Download MendeleyStructural Basis for Flexible Base Recognition by C/Ebpbeta
Tahirov, T.H., Inoue-Bungo, T., Sato, K., Sasaki, M., Ogata, K.To be published.
1GU5
Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter
- PDB DOI: https://doi.org/10.2210/pdb1GU5/pdb
- NAKB: 1GU5
- Classification: TRANSCRIPTION/DNA
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2002-01-24 Released: 2003-06-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.277
- R-Value Work: 0.229
- R-Value Observed: 0.229
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CAAT/ENHANCER BINDING PROTEIN BETA | 78 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P17676 (Homo sapiens) Explore P17676 Go to UniProtKB: P17676 | |||||
PHAROS: P17676 GTEx: ENSG00000172216 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P17676 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3' | 16 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3' | 16 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.277
- R-Value Work: 0.229
- R-Value Observed: 0.229
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.596 | α = 90 |
| b = 113.037 | β = 90 |
| c = 74.498 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2003-06-26 Deposition Author(s): Tahirov, T.H., Ogata, K.
Revision History (Full details and data files)
- Version 1.0: 2003-06-26
Type: Initial release - Version 1.1: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description
