Download MendeleyStructural Basis for Flexible Base Recognition by C/Ebpbeta
Tahirov, T.H., Inoue-Bungo, T., Sato, K., Sasaki, M., Ogata, K.To be published.
1GTW
crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter
- PDB DOI: https://doi.org/10.2210/pdb1GTW/pdb
- NAKB: 1GTW
- Classification: TRANSCRIPTION/DNA
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2002-01-22 Released: 2004-02-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.271
- R-Value Work: 0.231
- R-Value Observed: 0.231
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CAAT/ENHANCER BINDING PROTEIN BETA | 78 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P17676 (Homo sapiens) Explore P17676 Go to UniProtKB: P17676 | |||||
PHAROS: P17676 GTEx: ENSG00000172216 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P17676 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3' | 16 | N/A |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.271
- R-Value Work: 0.231
- R-Value Observed: 0.231
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.938 | α = 90 |
| b = 112.533 | β = 90 |
| c = 74.349 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 2004-02-06 Deposition Author(s): Tahirov, T.H., Ogata, K.
Revision History (Full details and data files)
- Version 1.0: 2004-02-06
Type: Initial release - Version 1.1: 2014-01-22
Changes: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance - Version 1.2: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description
