1EMW

SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS

PDB DOI: https://doi.org/10.2210/pdb1EMW/pdb
BMRB: 4727

Classification: RIBOSOME
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2000-03-20 Released: 2000-08-09
Deposition Author(s): Allard, P., Rak, A.V., Wimberly, B.T., Clemons Jr., W.M., Kalinin, A., Helgstrand, M., Garber, M.B., Ramakrishnan, V., Hard, T.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 47
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.

Allard, P., Rak, A.V., Wimberly, B.T., Clemons Jr., W.M., Kalinin, A., Helgstrand, M., Garber, M.B., Ramakrishnan, V., Hard, T.

(2000) Structure 8: 875-882

PubMed: 10997906 Search on PubMed
DOI: https://doi.org/10.1016/s0969-2126(00)00177-5
Primary Citation of Related Structures:
1EMW

PubMed Abstract:
X-ray crystallography has recently yielded much-improved electron-density maps of the bacterial ribosome and its two subunits and many structural details of bacterial ribosome subunits are now being resolved. One approach to complement the structures and elucidate the details of rRNA and protein packing is to determine structures of individual protein components and model these into existing intermediate resolution electron density.

Organizational Affiliation

Department of Biotechnology, Center for Structural Biochemistry, Royal Institute of Technology (KTH), Huddinge, Sweden.

Macromolecule Content

Total Structure Weight: 10.41 kDa
Atom Count: 735
Modelled Residue Count: 88
Deposited Residue Count: 88
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
S16 RIBOSOMAL PROTEIN	A	88	Thermus thermophilus	Mutation(s): 0
UniProt
Find proteins for P80379 (Thermus thermophilus) Explore P80379 Go to UniProtKB: P80379
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P80379
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 50
Conformers Submitted: 47
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2000-08-09

Deposition Author(s):

Clemons Jr., W.M.

Ramakrishnan, V.

Revision History (Full details and data files)

Version 1.0: 2000-08-09
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-02-16
Changes: Database references, Derived calculations

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.